Statistical and Machine Learning Techniques for Human Microbiome Studies COST action
Open government data analytics with R. An international developer network, originally introduced in NIPS Machine Learning Open Source Software workshop 2013.
R/CRAN packages.
- DMT Dependency Modeling Toolkit. ICML/MLOSS workshop, Israel 2010.
- earlywarnings. Methods for identification of critical transitions between ecosystem states from time series data (CRAN).
R/Bioconductor projects
- Microbiome bioinformatics software and tutorials
- Robust Probabilistic Averaging - scalable method for preprocessing short oligo microarray data.
- netresponse for functional network analysis and modeling of context-specific activation patterns
Julia projects
- Julia tools for ecological modeling.
Computational history, with a focus on European knowledge production in early modern era
Microbiome data Various data sets related to publications available in open repositories:
Data Dryad |
Figshare |
Github
Academic publishing data from FOIs
Full agreement texts for academic publisher agreements |
Scientific journal subscription costs in Finland 2010-2017; MoE/ATT FOI Request.